<!DOCTYPE html> 

<html>

<head>

<style>
</style>

<title>Mouse GRCm38 :: Dalliance</title> 
<script language="javascript" src="../build/dalliance-all.js"></script>

<script language="javascript">

var b = new Browser({
      chr:        '19',
      viewStart:  30000000,
      viewEnd:    30100000,
      cookieKey:  'mouse38',

      coordSystem: {
          speciesName: 'Mouse',
          taxon: 10090,
          auth: 'GRCm',
          version: 38,
          ucscName: 'mm10'
      },


    chains: {
      mm9ToMm10: new Chainset('http://www.derkholm.net:8080/das/mm9ToMm10/', 'NCBIM37', 'GRCm38',
                               {
                                  speciesName: 'Mouse',
                                  taxon: 10090,
                                  auth: 'NCBIM',
                                  version: 37,
                                  ucscName: 'mm9'
                               })
    }, 


      sources:      [{name: 'Genome',
                     twoBitURI:  'http://www.biodalliance.org/datasets/GRCm38/mm10.2bit',
                     desc: 'Mouse reference genome build GRCm38',
                     tier_type: 'sequence',
                     provides_entrypoints: true}
                      ,{name: 'Genes',
                        desc: 'Gene structures from GENCODE M2',
                        bwgURI: 'http://www.biodalliance.org/datasets/GRCm38/gencodeM2.bb',
                        stylesheet_uri: 'http://www.biodalliance.org/stylesheets/gencode.xml',
                        collapseSuperGroups: true,
                        trixURI: 'http://www.biodalliance.org/datasets/GRCm38/gencodeM2.ix'}
                      ,{name: 'Repeats',
                        desc: 'Repeat annotation from UCSC', 
                        bwgURI: 'http://www.biodalliance.org/datasets/GRCm38/repeats.bb',
                        stylesheet_uri: 'http://www.biodalliance.org/stylesheets/bb-repeats2.xml'}],
        uiPrefix: '../',
        fullScreen: true                    
});
</script>
</head>

<body>
<div id='svgHolder'>Failed to load the Biodalliance genome browser.  Have you run "gulp"?</div>
</body>
</html>

